Resources

How to cite

If this website helped you with your research, please cite an article (or articles) related to the services you used:

For FOD Late Stage (hydrophobicity profiles):

    • Banach, M. (2022). Symmetrization in the Calculation Pipeline of Gauss Function-Based Modeling of Hydrophobicity in Protein Structures. Symmetry, 14(9), 1876. https://doi.org/10.3390/sym14091876
    • Banach, M.; Chomilier, J.; Roterman, I. Contribution to the Understanding of Protein–Protein Interface and Ligand Binding Site Based on Hydrophobicity Distribution—Application to Ferredoxin I and II Cases. Appl. Sci. 2021, 11(18), 8514. https://doi.org/10.3390/app11188514
  2. For Ellipsoid Profile:
    • Banach M. (2023) Improved Assessment of Globularity of Protein Structures and the Ellipsoid Profile of the Biological Assemblies from the PDB. Biomolecules, 13(2), 385. https://doi.org/10.3390/biom13020385
    • Banach, M. (2021). Assessment of Globularity of Protein Structures via Minimum Volume Ellipsoids and Voxel-Based Atom Representation. Crystals, 11(12), 1539. https://doi.org/10.3390/cryst11121539
  3. For PK-Zernike:
    • Banach, M. (2023). Structural Outlier Detection and Zernike-Canterakis Moments for Molecular Surface Meshes - Fast Implementation in Python. Molecules, 29(1), 52. https://doi.org/10.3390/molecules29010052

In addition to the publications, you can also cite this entire website:

Banach, M. Fuzzy Oil Drop online server. Accessed: 2026-08-16. Available: https://fod.cm-uj.krakow.pl/