Fuzzy oil drop – late stage – hydrophobicity profiles

Job submission

Submit new FOD late stage hydrophobicity density profile calculation job.

Settings with underlined labels are required.

NOTE: layout of the textual output of fod-ls/profiles has been changed. It now includes DJS entropy values which are placed before DKL entropy values. Column labels in the header should be now easier to interpret. Secondary structure and contact maps are no longer included in the results; this behavior will (probably) return in future version of this server software; contact me (MB) if you really need it now.

Maximum size: 5 MB, only plain text PDB files are currently supported; prioritized over PDB ID.
Number (not index) of model in the structure to process.
Maximum 200 characters; if left empty, all residues in the model are processed; click here for documentation.
Algorithm to calculate radii of the drop. Click here for their comparison.
Algorithm to align effective atoms with axes of the coordinate system. Click here for their comparison.
One residue per row, in name:value format, where name is a PDB residue name (ALA, PRO, etc) and value is a real number, for example: lys:0.123. If non-standard residues are specified here, they are included in the calculation. Note that existing PDB MODRES records are applied automatically before that, so – for example – MSE becomes MET without the need to be specified here.