Ellipsoid Profile

Job submission

Submit new Ellipsoid Profile calculation job.

Settings with underlined labels are required.

Maximum size: 5 MB, only plain text PDB files are currently supported; prioritized over PDB ID.
Number (not index) of model in the structure to process.
Maximum 200 characters; if left empty, all residues in the model are processed; click here for documentation.
Outlier detection algorithm. Click here for their comparison.
Note: the results are different even if outlier detection is omitted due to smaller bounding ellipsoid size in Banach 2023.
Number of outlier detection rounds via PCA and confidence ellipsoid. Set to 0 to skip.
Note: this setting is used only when outlier detection algorithm is set to Banach 2023 (PCA).
Confidence level for outlier detection via PCA and confidence ellipsoid.
Note: this setting is used only when outlier detection algorithm is set to Banach 2023 (PCA).
Number of medians of effective atom kernel density profile for structural outlier detection. Set to 0 to skip.
Note: this setting is used only when outlier detection algorithm is set to Banach 2021 (KDE).